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For agents: docs.synapse.org: documentation for Synapse, a collaborative research data platform covering datasets, metadata, data access, API clients and challenges.

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llms.txt
https://docs.synapse.org/llms.txt
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Science and research · Data and analytics · Documentation and reference
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Interface: a documented API or declared MCP endpoint an agent can call
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Read documentation Call an API Download data About these labels
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The beginning of the file, from our validated copy saved 2026-10-23T17:26:27.463Z. Cached copy · Source on synapse.org

# docs.synapse.org

* [Documentation](https://docs.synapse.org/synapse-docs.md)
* [About Synapse](https://docs.synapse.org/synapse-docs/about-synapse.md)
* [Annotating Data With Metadata](https://docs.synapse.org/synapse-docs/annotating-data-with-metadata.md)
* [API Clients and Documentation](https://docs.synapse.org/synapse-docs/api-clients-and-documentation.md)
* [Challenges](https://docs.synapse.org/synapse-docs/challenges.md)
* [Citing Data](https://docs.synapse.org/synapse-docs/citing-data.md)
* [Client Configuration](https://docs.synapse.org/synapse-docs/client-configuration.md)
* [Cloud Computing](https://docs.synapse.org/synapse-docs/cloud-computing.md)
* [Collaborating in Synapse](https://docs.synapse.org/synapse-docs/collaborating-in-synapse.md)
* [Combining Data from Multiple Table Sources](https://docs.synapse.org/synapse-docs/combining-data-from-multiple-table-sources.md)
* [Compute Directly on Data in Synapse or S3](https://docs.synapse.org/synapse-docs/compute-directly-on-data-in-synapse-or-s3.md)
* [Creating and Managing Wikis](https://docs.synapse.org/synapse-docs/creating-and-managing-wikis.md)
* [Curating Data](https://docs.synapse.org/synapse-docs/curating-data.md)
* [Custom Storage Locations](https://docs.synapse.org/synapse-docs/custom-storage-locations.md)
* [Data Access Types](https://docs.synapse.org/synapse-docs/data-access-types.md)
* [Datasets](https://docs.synapse.org/synapse-docs/datasets.md)
* [Digital Object Identifiers (DOIs)](https://docs.synapse.org/synapse-docs/digital-object-identifiers-dois.md)
* [Discussion Forums](https://docs.synapse.org/synapse-docs/discussion-forums.md)
* [Downloading Data From the Synapse UI](https://docs.synapse.org/synapse-docs/downloading-data-from-the-synapse-ui.md)
* [Downloading Data Programmatically](https://docs.synapse.org/synapse-docs/downloading-data-programmatically.md)
* [Downloading Data Programmatically From a Portal](https://docs.synapse.org/synapse-docs/downloading-data-programmatically-from-a-portal.md)
* [Evaluating Submissions](https://docs.synapse.org/synapse-docs/evaluating-submissions.md)
* [Evaluation Queues](https://docs.synapse.org/synapse-docs/evaluation-queues.md)
* [FAQ](https://docs.synapse.org/synapse-docs/faq.md)
* [Finding and Downloading Data](https://docs.synapse.org/synapse-docs/finding-and-downloading-data.md)
* [Getting Started](https://docs.synapse.org/synapse-docs/getting-started.md)
* [Glossary](https://docs.synapse.org/synapse-docs/glossary.md)
* [Help](https://docs.synapse.org/synapse-docs/help.md)
* [Installing Synapse API Clients](https://docs.synapse.org/synapse-docs/installing-synapse-api-clients.md)
* [Integrating Synapse With Your RNA-Seq Workflow](https://docs.synapse.org/synapse-docs/integrating-synapse-with-your-rna-seq-workflow.md)
* [JSON Schemas](https://docs.synapse.org/synapse-docs/json-schemas.md)
* [Linking to External Repositories and Registries with Bioregistry](https://docs.synapse.org/synapse-docs/linking-to-external-reposit
…

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