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Seqera Docs
Documentation for Seqera products — Seqera Platform Cloud, Seqera Platform Enterprise, Seqera Platform API, Seqera Platform CLI, Nextflow, MultiQC, Fusion, and Wave.
For agents: Documentation for Seqera products: Seqera Platform (Cloud and Enterprise), its API and CLI, Nextflow, MultiQC, Fusion, Wave, and Co-Scientist agent features.
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- llms.txt
- https://docs.seqera.io/llms.txt
- llms-full.txt
- https://docs.seqera.io/llms-full.txt
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The beginning of the file, from our validated copy saved 2026-10-25T06:11:36.387Z. Cached copy · Source on seqera.io
# Seqera Docs
> Documentation for Seqera products — Seqera Platform Cloud, Seqera Platform Enterprise, Seqera Platform API, Seqera Platform CLI, Nextflow, MultiQC, Fusion, and Wave.
This file contains links to all Seqera product documentation following the llmstxt.org standard.
# Seqera Platform Enterprise
> Documentation for Seqera Platform Enterprise.
This file contains links to Seqera Platform Enterprise documentation following the llmstxt.org standard.
## Table of Contents
- [Admin panel](https://docs.seqera.io/platform-enterprise_docs/administration/overview.md): Overview of Seqera user and organization administration
- [Agents](https://docs.seqera.io/platform-enterprise_docs/co-scientist/agents.md): Create reusable background agents in a workspace and run them against your pipelines
- [Authentication](https://docs.seqera.io/platform-enterprise_docs/co-scientist/authentication.md): Log in, log out, and manage organizations and tokens in the Seqera CLI
- [Bedrock setup](https://docs.seqera.io/platform-enterprise_docs/co-scientist/bedrock-setup.md): Configure AWS Bedrock model access, IAM permissions, and the AgentCore runtime for Co-Scientist
- [Coding agents](https://docs.seqera.io/platform-enterprise_docs/co-scientist/coding-agents.md): Install Co-Scientist as a skill so your coding agent can drive Seqera Platform
- [Command approval](https://docs.seqera.io/platform-enterprise_docs/co-scientist/command-approval.md): Control which local commands require user approval in Co-Scientist
- [Using Co-Scientist](https://docs.seqera.io/platform-enterprise_docs/co-scientist/configuration.md): Use Co-Scientist day to day in the Seqera CLI
- [Co-Scientist](https://docs.seqera.io/platform-enterprise_docs/co-scientist/index.md): AI assistant for bioinformatics in Seqera Platform Enterprise, available in Seqera Platform and the Seqera CLI
- [Installation](https://docs.seqera.io/platform-enterprise_docs/co-scientist/installation.md): Install and configure the Seqera CLI
- [Modes](https://docs.seqera.io/platform-enterprise_docs/co-scientist/modes.md): Work in Co-Scientist's build, plan, and goal modes
- [Code intelligence](https://docs.seqera.io/platform-enterprise_docs/co-scientist/nextflow-lsp.md): Use language-server code intelligence in Co-Scientist
- [Co-Scientist in Seqera Platform](https://docs.seqera.io/platform-enterprise_docs/co-scientist/platform.md): Use the Co-Scientist panel in Seqera Platform Enterprise to ask about the run, pipeline, or dataset you are viewing
- [Prerequisites](https://docs.seqera.io/platform-enterprise_docs/co-scientist/prerequisites.md): Prerequisites for Co-Scientist
- [Projects](https://docs.seqera.io/platform-enterprise_docs/co-scientist/projects.md): Organize workspace resources into projects using Seqera Platform labels
- [Quickstart](https://docs.seqera.io/platform-enterprise_docs/co-scientist/quickstart.md): Run your first Co-Scientist session in the Seqera CLI
- [CLI](https://docs.seqera.io/platform-enterpri
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