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Protein Metrics

Mass spectrometry software for biotherapeutic protein characterization and quantification. Part of the Dotmatics scientific R&D platform.

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llms.txt
https://www.proteinmetrics.com/llms.txt
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2011-01-28
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Documentation: developer or product docs worth reading, nothing to call
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The beginning of the file, from our validated copy saved 2026-10-27T19:27:31.064Z. Cached copy · Source on proteinmetrics.com

# Protein Metrics

> Mass spectrometry software for biotherapeutic protein characterization and quantification. Part of the Dotmatics scientific R&D platform.

Protein Metrics provides vendor-neutral, instrument-agnostic software that accelerates biopharmaceutical characterization and quantification using mass spectrometry data. Used by leading pharmaceutical and biotech organizations, its products span from desktop MS/MS search engines to cloud-based enterprise platforms for protein, peptide, and oligonucleotide analysis.

## Products

- [Byonic](https://www.proteinmetrics.com/products/byonic): MS/MS search engine for precise peptide and protein identification, PTM characterization, and comprehensive proteomic insights. Available with academic and corporate per-user/year licensing — see the Pricing page for current figures.
- [Byos](https://www.proteinmetrics.com/products/byos): Desktop solution for total biopharmaceutical characterization. Vendor-neutral, instrument-agnostic software with automated workflows and templated reporting. Includes everything in Byonic. Custom pricing.
- [Byosphere](https://www.proteinmetrics.com/products/byosphere): Cloud-based enterprise platform for biopharmaceutical R&D. AI-powered analytics, deep query capabilities, advanced dashboards, and real-time collaboration. Includes everything in Byos. Custom pricing.
- [Adaptive Image Compression](https://www.proteinmetrics.com/products/adaptive-image-compression): Image compression technology for digital pathology and whole-slide microscopy applications.

## Workflows

- [Intact Mass](https://www.proteinmetrics.com/products/intact-workflows): Automated workflows for intact and top-down mass analysis of biotherapeutics.
- [Oligonucleotides](https://www.proteinmetrics.com/products/oligo-workflows): Characterization and sequencing workflows for oligonucleotide therapeutics.
- [Multi-Protein Quantitation](https://www.proteinmetrics.com/products/multi-protein-quantitation-workflows): Simultaneous quantitation of multiple proteins from a single MS experiment.
- [Peptide](https://www.proteinmetrics.com/products/peptide-workflows): Peptide mapping workflows for sequence confirmation and PTM localization.
- [Chromatogram](https://www.proteinmetrics.com/products/chromatogram-workflows): Chromatogram-based analysis workflows for biopharmaceutical release testing.
- [De Novo Sequencing](https://www.proteinmetrics.com/products/de-novo-sequencing-workflows): De novo peptide sequencing without reference database requirement.
- [Reconstruction](https://www.proteinmetrics.com/products/reconstruction-workflows): Spectral reconstruction workflows for complex mixture analysis.
- [Higher Order Structure](https://www.proteinmetrics.com/products/hos-workflows): Workflows for characterizing protein higher-order structure via HDX-MS and crosslinking.
- [Dashboards](https://www.proteinmetrics.com/products/dashboards): Configurable analytical dashboards for monitoring and comparing biotherapeutic
…

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