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Bioptimus Documentation

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# Bioptimus Documentation

- [Welcome](https://docs.bioptimus.com/documentation/introduction.md): Deploy and build with foundation models for biology — across histology, transcriptomics, and genomics.
- [Quickstart](https://docs.bioptimus.com/documentation/quickstart.md): Pick your model and platform, then run your first inference.
- [H-Optimus](https://docs.bioptimus.com/documentation/models/h-optimus.md): A vision foundation model for histology feature extraction.
- [M-Optimus](https://docs.bioptimus.com/documentation/models/m-optimus.md): A multimodal, multi-scale foundation model that predicts spatial gene expression from histology.
- [Tissue segmentation](https://docs.bioptimus.com/documentation/models/tissue-segmentation.md): Separate tissue from background before feature extraction.
- [Benchmarks](https://docs.bioptimus.com/documentation/models/benchmarks.md): Independent benchmark results for Bioptimus pathology models.
- [Drug target & biomarker discovery](https://docs.bioptimus.com/documentation/use-cases/biomarker-discovery.md): Predict drug target distribution, immune microenvironment, and stromal architecture from routine histology slides.
- [Indication expansion](https://docs.bioptimus.com/documentation/use-cases/indication-expansion.md): Identify the patient subsets and indications where a therapeutic is most likely to succeed.
- [Diagnostics & spatial biology](https://docs.bioptimus.com/documentation/use-cases/diagnostics-spatial-biology.md): Integrate histology, spatial transcriptomics, and genomics in a single pipeline.
- [Treatment response & trial design](https://docs.bioptimus.com/documentation/use-cases/treatment-response.md): Discover multimodal biomarker signatures that distinguish responders from non-responders.
- [FAQ](https://docs.bioptimus.com/documentation/resources/faq.md): Common questions about deploying and using Bioptimus models.
- [Glossary](https://docs.bioptimus.com/documentation/resources/glossary.md): Key terms used across Bioptimus documentation.
- [Responsible use](https://docs.bioptimus.com/documentation/resources/responsible-use.md): Intended use, regulatory status, license terms, responsibilities, and disclaimer.
- [License](https://docs.bioptimus.com/license.md)
- [Deployment overview](https://docs.bioptimus.com/deployment/overview.md): Choose the right way to access Bioptimus models.
- [Requirements](https://docs.bioptimus.com/deployment/requirements.md): Prerequisites for each deployment option.
- [Validation & acceptance testing](https://docs.bioptimus.com/deployment/validation.md): Verify a deployment produces correct, expected outputs.
- [AWS SageMaker](https://docs.bioptimus.com/deployment/platforms/aws-sagemaker.md): Deploy a Bioptimus model from AWS Marketplace to a SageMaker endpoint.
- [On-premise](https://docs.bioptimus.com/deployment/platforms/on-premise.md): Load, run, and verify the Bioptimus Model Server container in your own environment.
- [Hugging Face](https://docs.bioptimus.com/deplo
…

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