# The Barbara K. Ostrom (1978) Bioinformatics and Co

## The Barbara K. Ostrom (1978) Bioinformatics and Co

- [The Barbara K. Ostrom (1978) Bioinformatics and Computing Facility](https://igb.mit.edu/the-barbara-k.-ostrom-1978-bioinformatics-and-computing-facility.md)
- [Computing Resources](https://igb.mit.edu/computing-resources.md)
- [Active Data Storage](https://igb.mit.edu/computing-resources/active-data-storage.md)
- [Archive Data Storage](https://igb.mit.edu/computing-resources/archive-data-storage.md)
- [Luria Cluster](https://igb.mit.edu/computing-resources/luria-cluster.md)
- [FAQs](https://igb.mit.edu/computing-resources/luria-cluster/faqs.md)
- [Seqera Platform Cloud](https://igb.mit.edu/computing-resources/seqera-platform-cloud.md): Documentation on the Seqera Platform Cloud for running Nextflow pipelines
- [Getting Started with Seqera](https://igb.mit.edu/computing-resources/seqera-platform-cloud/getting-started-with-seqera.md)
- [Using Seqera](https://igb.mit.edu/computing-resources/seqera-platform-cloud/using-seqera.md)
- [Seqera Landing Page](https://igb.mit.edu/computing-resources/seqera-platform-cloud/using-seqera/seqera-landing-page.md)
- [Submitting a Nextflow Pipeline to Seqera](https://igb.mit.edu/computing-resources/seqera-platform-cloud/using-seqera/submitting-a-nextflow-pipeline-to-seqera.md)
- [Submitting a Nextflow Pipeline using Seqerakit](https://igb.mit.edu/computing-resources/seqera-platform-cloud/using-seqera/submitting-a-nextflow-pipeline-using-seqerakit.md)
- [Other Resources](https://igb.mit.edu/computing-resources/other-resources.md): A brief summary of local and campus-wide computing resources.
- [Bioinformatics Topics](https://igb.mit.edu/bioinformatics-topics.md)
- [Tools - A Basic Bioinformatics Toolkit](https://igb.mit.edu/bioinformatics-topics/tools-a-basic-bioinformatics-toolkit.md)
- [Getting more out of Microsoft Excel](https://igb.mit.edu/bioinformatics-topics/tools-a-basic-bioinformatics-toolkit/getting-more-out-of-microsoft-excel.md)
- [Bioinformatics Applications of Unix](https://igb.mit.edu/bioinformatics-topics/tools-a-basic-bioinformatics-toolkit/bioinformatics-applications-of-unix.md)
- [Unix commands applied to bioinformatics](https://igb.mit.edu/bioinformatics-topics/tools-a-basic-bioinformatics-toolkit/bioinformatics-applications-of-unix/unix-commands-applied-to-bioinformatics.md)
- [Manipulate NGS files using UNIX commands](https://igb.mit.edu/bioinformatics-topics/tools-a-basic-bioinformatics-toolkit/bioinformatics-applications-of-unix/manipulate-ngs-files-using-unix-commands.md)
- [Manipulate alignment files using UNIX commands](https://igb.mit.edu/bioinformatics-topics/tools-a-basic-bioinformatics-toolkit/bioinformatics-applications-of-unix/manipulate-alignment-files-using-unix-commands.md)
- [Alignments and Mappers](https://igb.mit.edu/bioinformatics-topics/tools-a-basic-bioinformatics-toolkit/alignments-and-mappers.md)
- [Relational databases](https://igb.mit.edu/bioinformatics-topics/tools-a-basic-bioinformatics-toolkit/relational-databases.md)
- [Running Joins on Galaxy](https://igb.mit.edu/bioinformatics-topics/tools-a-basic-bioinformatics-toolkit/relational-databases/running-joins-on-galaxy.md)
- [Spotfire](https://igb.mit.edu/bioinformatics-topics/tools-a-basic-bioinformatics-toolkit/spotfire.md)
- [Tasks - Bioinformatics Methods](https://igb.mit.edu/bioinformatics-topics/tasks-bioinformatics-methods.md)
- [UCSC Genome Bioinformatics](https://igb.mit.edu/bioinformatics-topics/tasks-bioinformatics-methods/ucsc-genome-bioinformatics.md)
- [Interacting with the UCSC Genome Browser](https://igb.mit.edu/bioinformatics-topics/tasks-bioinformatics-methods/ucsc-genome-bioinformatics/interacting-with-the-ucsc-genome-browser.md)
- [Obtaining DNA sequence from the UCSC Database](https://igb.mit.edu/bioinformatics-topics/tasks-bioinformatics-methods/ucsc-genome-bioinformatics/obtaining-dna-sequence-from-the-ucsc-database.md)
- [Obtaining genomic data from the UCSC database using table browser queries](https://igb.mit.edu/bioinformatics-topics/tasks-bioinformatics-methods/ucsc-genome-bioinformatics/obtaining-genomic-data-from-the-ucsc-database-using-table-browser-queries.md)
- [Filtering table browser queries](https://igb.mit.edu/bioinformatics-topics/tasks-bioinformatics-methods/ucsc-genome-bioinformatics/filtering-table-browser-queries.md)
- [Performing a BLAT search](https://igb.mit.edu/bioinformatics-topics/tasks-bioinformatics-methods/ucsc-genome-bioinformatics/performing-a-blat-search.md)
- [Creating Custom Tracks](https://igb.mit.edu/bioinformatics-topics/tasks-bioinformatics-methods/ucsc-genome-bioinformatics/creating-custom-tracks.md)
- [UCSC Intersection Queries](https://igb.mit.edu/bioinformatics-topics/tasks-bioinformatics-methods/ucsc-genome-bioinformatics/ucsc-intersection-queries.md)
- [Viewing cross-species alignments](https://igb.mit.edu/bioinformatics-topics/tasks-bioinformatics-methods/ucsc-genome-bioinformatics/viewing-cross-species-alignments.md)
- [Galaxy](https://igb.mit.edu/bioinformatics-topics/tasks-bioinformatics-methods/ucsc-genome-bioinformatics/galaxy.md)
- [Intro to Galaxy](https://igb.mit.edu/bioinformatics-topics/tasks-bioinformatics-methods/ucsc-genome-bioinformatics/galaxy/intro-to-galaxy.md)
- [Galaxy NGS Illumina QC](https://igb.mit.edu/bioinformatics-topics/tasks-bioinformatics-methods/ucsc-genome-bioinformatics/galaxy/galaxy-ngs-illumina-qc.md)
- [Galaxy NGS Illumina SE Mapping](https://igb.mit.edu/bioinformatics-topics/tasks-bioinformatics-methods/ucsc-genome-bioinformatics/galaxy/galaxy-ngs-illumina-se-mapping.md)
- [Galaxy SNP Interval Data](https://igb.mit.edu/bioinformatics-topics/tasks-bioinformatics-methods/ucsc-genome-bioinformatics/galaxy/galaxy-snp-interval-data.md)
- [Editing and annotation gene structures with Argo](https://igb.mit.edu/bioinformatics-topics/tasks-bioinformatics-methods/ucsc-genome-bioinformatics/editing-and-annotation-gene-structures-with-argo.md)
- [GeneGO MetaCore](https://igb.mit.edu/bioinformatics-topics/tasks-bioinformatics-methods/genego-metacore.md)
- [GeneGo Introduction](https://igb.mit.edu/bioinformatics-topics/tasks-bioinformatics-methods/genego-metacore/genego-introduction.md)
- [Loading Data Into GeneGO](https://igb.mit.edu/bioinformatics-topics/tasks-bioinformatics-methods/genego-metacore/loading-data-into-genego.md)
- [Data Management in GeneGO](https://igb.mit.edu/bioinformatics-topics/tasks-bioinformatics-methods/genego-metacore/data-management-in-genego.md)
- [Setting Thresholds and Background Sets](https://igb.mit.edu/bioinformatics-topics/tasks-bioinformatics-methods/genego-metacore/setting-thresholds-and-background-sets.md)
- [Search And Browse Content Tab](https://igb.mit.edu/bioinformatics-topics/tasks-bioinformatics-methods/genego-metacore/search-and-browse-content-tab.md)
- [Workflows and Reports Tab](https://igb.mit.edu/bioinformatics-topics/tasks-bioinformatics-methods/genego-metacore/workflows-and-reports-tab.md)
- [One-click Analysis Tab](https://igb.mit.edu/bioinformatics-topics/tasks-bioinformatics-methods/genego-metacore/one-click-analysis-tab.md)
- [Building Network for Your Experimental Data](https://igb.mit.edu/bioinformatics-topics/tasks-bioinformatics-methods/genego-metacore/building-network-for-your-experimental-data.md)
- [Functional Annotation of Gene Lists](https://igb.mit.edu/bioinformatics-topics/tasks-bioinformatics-methods/functional-annotation-of-gene-lists.md)
- [Multiple Sequence Alignment](https://igb.mit.edu/bioinformatics-topics/tasks-bioinformatics-methods/multiple-sequence-alignment.md)
- [Clustalw2](https://igb.mit.edu/bioinformatics-topics/tasks-bioinformatics-methods/multiple-sequence-alignment/clustalw2.md)
- [Phylogenetic analysis](https://igb.mit.edu/bioinformatics-topics/tasks-bioinformatics-methods/phylogenetic-analysis.md)
- [Neighbor Joining method in Phylip](https://igb.mit.edu/bioinformatics-topics/tasks-bioinformatics-methods/phylogenetic-analysis/neighbor-joining-method-in-phylip.md)
- [Microarray data processing with R/Bioconductor](https://igb.mit.edu/bioinformatics-topics/tasks-bioinformatics-methods/microarray-data-processing-with-r-bioconductor.md)
- [Running Jupyter notebooks on luria cluster nodes](https://igb.mit.edu/bioinformatics-topics/running-jupyter-notebooks-on-luria-cluster-nodes.md)
- [Data Management](https://igb.mit.edu/data-management.md)
- [Globus](https://igb.mit.edu/data-management/globus.md)
- [Using Globus](https://igb.mit.edu/data-management/globus/using-globus.md)
- [Koch Institute-Managed Collections](https://igb.mit.edu/data-management/globus/koch-institute-managed-collections.md)
- [Additional Resources](https://igb.mit.edu/data-management/globus/additional-resources.md)
- [Mini Courses](https://igb.mit.edu/mini-courses.md)
- [Schedule](https://igb.mit.edu/mini-courses/schedule.md)
- [Previous Teaching](https://igb.mit.edu/mini-courses/schedule/previous-teaching.md)
- [Introduction to Unix](https://igb.mit.edu/mini-courses/introduction-to-unix.md)
- [Why Unix?](https://igb.mit.edu/mini-courses/introduction-to-unix/why-unix.md)
- [The Unix Filesystem](https://igb.mit.edu/mini-courses/introduction-to-unix/the-unix-filesystem.md)
- [The Unix Tree](https://igb.mit.edu/mini-courses/introduction-to-unix/the-unix-filesystem/the-unix-tree.md)
- [Network Filesystems](https://igb.mit.edu/mini-courses/introduction-to-unix/the-unix-filesystem/network-filesystems.md)
- [The Unix Shell](https://igb.mit.edu/mini-courses/introduction-to-unix/the-unix-shell.md)
- [About the Unix Shell](https://igb.mit.edu/mini-courses/introduction-to-unix/the-unix-shell/about-the-unix-shell.md)
- [Unix Shell Manual Pages](https://igb.mit.edu/mini-courses/introduction-to-unix/the-unix-shell/unix-shell-manual-pages.md)
- [Using the Unix Shell](https://igb.mit.edu/mini-courses/introduction-to-unix/the-unix-shell/using-the-unix-shell.md)
- [Viewing the Unix Tree](https://igb.mit.edu/mini-courses/introduction-to-unix/the-unix-shell/using-the-unix-shell/viewing-the-unix-tree.md)
- [Traversing the Unix Tree](https://igb.mit.edu/mini-courses/introduction-to-unix/the-unix-shell/using-the-unix-shell/traversing-the-unix-tree.md)
- [Editing the Unix Tree](https://igb.mit.edu/mini-courses/introduction-to-unix/the-unix-shell/using-the-unix-shell/editing-the-unix-tree.md)
- [Searching the Unix Tree](https://igb.mit.edu/mini-courses/introduction-to-unix/the-unix-shell/using-the-unix-shell/searching-the-unix-tree.md)
- [Files](https://igb.mit.edu/mini-courses/introduction-to-unix/files.md)
- [Viewing File Contents](https://igb.mit.edu/mini-courses/introduction-to-unix/files/viewing-file-contents.md)
- [Creating and Editing Files](https://igb.mit.edu/mini-courses/introduction-to-unix/files/creating-and-editing-files.md)
- [Manipulating Files](https://igb.mit.edu/mini-courses/introduction-to-unix/files/manipulating-files.md)
- [Symbolic Links](https://igb.mit.edu/mini-courses/introduction-to-unix/files/symbolic-links.md)
- [File Ownership](https://igb.mit.edu/mini-courses/introduction-to-unix/files/file-ownership.md)
- [How Unix File Ownership Works](https://igb.mit.edu/mini-courses/introduction-to-unix/files/file-ownership/how-unix-file-ownership-works.md)
- [Change File Ownership and Permissions](https://igb.mit.edu/mini-courses/introduction-to-unix/files/file-ownership/change-file-ownership-and-permissions.md)
- [File Transfer (in-progress)](https://igb.mit.edu/mini-courses/introduction-to-unix/files/file-transfer-in-progress.md)
- [File Storage and Compression](https://igb.mit.edu/mini-courses/introduction-to-unix/files/file-storage-and-compression.md)
- [Getting System Information](https://igb.mit.edu/mini-courses/introduction-to-unix/getting-system-information.md)
- [Writing Scripts](https://igb.mit.edu/mini-courses/introduction-to-unix/writing-scripts.md)
- [Schedule Scripts Using Crontab](https://igb.mit.edu/mini-courses/introduction-to-unix/schedule-scripts-using-crontab.md)
- [Advanced Utilization of IGB Computational Resources](https://igb.mit.edu/mini-courses/advanced-utilization-of-igb-computational-resources.md)
- [High Performance Computing Clusters](https://igb.mit.edu/mini-courses/advanced-utilization-of-igb-computational-resources/high-performance-computing-clusters.md)
- [Slurm](https://igb.mit.edu/mini-courses/advanced-utilization-of-igb-computational-resources/slurm.md)
- [Checking the Status of Computing Nodes](https://igb.mit.edu/mini-courses/advanced-utilization-of-igb-computational-resources/slurm/checking-the-status-of-computing-nodes.md)
- [Submitting Jobs / Slurm Scripts](https://igb.mit.edu/mini-courses/advanced-utilization-of-igb-computational-resources/slurm/submitting-jobs-slurm-scripts.md)
- [Interactive Sessions](https://igb.mit.edu/mini-courses/advanced-utilization-of-igb-computational-resources/slurm/interactive-sessions.md)
- [Package Management](https://igb.mit.edu/mini-courses/advanced-utilization-of-igb-computational-resources/package-management.md)
- [The System Package Manager](https://igb.mit.edu/mini-courses/advanced-utilization-of-igb-computational-resources/package-management/the-system-package-manager.md)
- [Environment Modules](https://igb.mit.edu/mini-courses/advanced-utilization-of-igb-computational-resources/package-management/environment-modules.md)
- [Conda Environments](https://igb.mit.edu/mini-courses/advanced-utilization-of-igb-computational-resources/package-management/conda-environments.md)
- [SSH Port Forwarding](https://igb.mit.edu/mini-courses/advanced-utilization-of-igb-computational-resources/ssh-port-forwarding.md)
- [SSH Port Forwarding Jupyter Notebooks](https://igb.mit.edu/mini-courses/advanced-utilization-of-igb-computational-resources/ssh-port-forwarding/ssh-port-forwarding-jupyter-notebooks.md)
- [Containerization](https://igb.mit.edu/mini-courses/advanced-utilization-of-igb-computational-resources/containerization.md)
- [Docker](https://igb.mit.edu/mini-courses/advanced-utilization-of-igb-computational-resources/containerization/docker.md)
- [Docker Installation](https://igb.mit.edu/mini-courses/advanced-utilization-of-igb-computational-resources/containerization/docker/docker-installation.md)
- [Running Docker Images](https://igb.mit.edu/mini-courses/advanced-utilization-of-igb-computational-resources/containerization/docker/running-docker-images.md)
- [Building Docker Images](https://igb.mit.edu/mini-courses/advanced-utilization-of-igb-computational-resources/containerization/docker/building-docker-images.md)
- [Singularity](https://igb.mit.edu/mini-courses/advanced-utilization-of-igb-computational-resources/containerization/singularity.md)
- [Differences from Docker](https://igb.mit.edu/mini-courses/advanced-utilization-of-igb-computational-resources/containerization/singularity/differences-from-docker.md)
- [Running Images in Singularity](https://igb.mit.edu/mini-courses/advanced-utilization-of-igb-computational-resources/containerization/singularity/running-images-in-singularity.md)
- [Running Nextflow / nf-core Pipelines](https://igb.mit.edu/mini-courses/advanced-utilization-of-igb-computational-resources/running-nextflow-nf-core-pipelines.md)
- [Python](https://igb.mit.edu/mini-courses/python.md)
- [Introduction to Python for Biologists](https://igb.mit.edu/mini-courses/python/introduction-to-python-for-biologists.md)
- [Interactive Python](https://igb.mit.edu/mini-courses/python/introduction-to-python-for-biologists/interactive-python.md)
- [Types](https://igb.mit.edu/mini-courses/python/introduction-to-python-for-biologists/types.md)
- [Strings](https://igb.mit.edu/mini-courses/python/introduction-to-python-for-biologists/types/strings.md)
- [Lists](https://igb.mit.edu/mini-courses/python/introduction-to-python-for-biologists/types/lists.md)
- [Tuples](https://igb.mit.edu/mini-courses/python/introduction-to-python-for-biologists/types/tuples.md)
- [Dictionaries](https://igb.mit.edu/mini-courses/python/introduction-to-python-for-biologists/types/dictionaries.md)
- [Control Flow](https://igb.mit.edu/mini-courses/python/introduction-to-python-for-biologists/control-flow.md)
- [Loops](https://igb.mit.edu/mini-courses/python/introduction-to-python-for-biologists/loops.md)
- [For Loops](https://igb.mit.edu/mini-courses/python/introduction-to-python-for-biologists/loops/for-loops.md)
- [While Loops](https://igb.mit.edu/mini-courses/python/introduction-to-python-for-biologists/loops/while-loops.md)
- [Control Flows and Loops](https://igb.mit.edu/mini-courses/python/introduction-to-python-for-biologists/control-flows-and-loops.md)
- [Storing Programs for Re-use](https://igb.mit.edu/mini-courses/python/introduction-to-python-for-biologists/storing-programs-for-re-use.md)
- [Reading and Writing Files](https://igb.mit.edu/mini-courses/python/introduction-to-python-for-biologists/reading-and-writing-files.md)
- [Functions](https://igb.mit.edu/mini-courses/python/introduction-to-python-for-biologists/functions.md)
- [Biopython](https://igb.mit.edu/mini-courses/python/biopython.md)
- [About Biopython](https://igb.mit.edu/mini-courses/python/biopython/about-biopython.md)
- [Quick Start](https://igb.mit.edu/mini-courses/python/biopython/quick-start.md)
- [Basic Sequence Analyses](https://igb.mit.edu/mini-courses/python/biopython/quick-start/basic-sequence-analyses.md)
- [SeqRecord](https://igb.mit.edu/mini-courses/python/biopython/quick-start/seqrecord.md)
- [Sequence IO](https://igb.mit.edu/mini-courses/python/biopython/quick-start/sequence-io.md)
- [Exploration of Entrez Databases](https://igb.mit.edu/mini-courses/python/biopython/quick-start/exploration-of-entrez-databases.md)
- [Example Projects](https://igb.mit.edu/mini-courses/python/biopython/example-projects.md)
- [Coronavirus Exploration](https://igb.mit.edu/mini-courses/python/biopython/example-projects/coronavirus-exploration.md)
- [Translating a eukaryotic FASTA file of CDS entries](https://igb.mit.edu/mini-courses/python/biopython/example-projects/translating-a-eukaryotic-fasta-file-of-cds-entries.md)
- [Further Resources](https://igb.mit.edu/mini-courses/python/biopython/further-resources.md)
- [Machine Learning with Python](https://igb.mit.edu/mini-courses/python/machine-learning-with-python.md)
- [About Machine Learning](https://igb.mit.edu/mini-courses/python/machine-learning-with-python/about-machine-learning.md)
- [Hands-On](https://igb.mit.edu/mini-courses/python/machine-learning-with-python/hands-on.md)
- [Project Introduction](https://igb.mit.edu/mini-courses/python/machine-learning-with-python/hands-on/project-introduction.md)
- [Supervised Approaches](https://igb.mit.edu/mini-courses/python/machine-learning-with-python/hands-on/supervised-approaches.md)
- [The Logistic Regression Model](https://igb.mit.edu/mini-courses/python/machine-learning-with-python/hands-on/supervised-approaches/the-logistic-regression-model.md)
- [K-Nearest Neighbors](https://igb.mit.edu/mini-courses/python/machine-learning-with-python/hands-on/supervised-approaches/k-nearest-neighbors.md)
- [Unsupervised Approaches](https://igb.mit.edu/mini-courses/python/machine-learning-with-python/hands-on/unsupervised-approaches.md)
- [K-Means Clustering](https://igb.mit.edu/mini-courses/python/machine-learning-with-python/hands-on/unsupervised-approaches/k-means-clustering.md)
- [Further Resources](https://igb.mit.edu/mini-courses/python/machine-learning-with-python/hands-on/further-resources.md)
- [Data Processing with Python](https://igb.mit.edu/mini-courses/python/data-processing-with-python.md)
- [Pandas](https://igb.mit.edu/mini-courses/python/data-processing-with-python/pandas.md)
- [About Pandas](https://igb.mit.edu/mini-courses/python/data-processing-with-python/pandas/about-pandas.md)
- [Making DataFrames](https://igb.mit.edu/mini-courses/python/data-processing-with-python/pandas/making-dataframes.md)
- [Inspecting DataFrames](https://igb.mit.edu/mini-courses/python/data-processing-with-python/pandas/inspecting-dataframes.md)
- [Slicing DataFrames](https://igb.mit.edu/mini-courses/python/data-processing-with-python/pandas/slicing-dataframes.md)
- [Selecting from DataFrames](https://igb.mit.edu/mini-courses/python/data-processing-with-python/pandas/selecting-from-dataframes.md)
- [Editing DataFrames](https://igb.mit.edu/mini-courses/python/data-processing-with-python/pandas/editing-dataframes.md)
- [Matplotlib](https://igb.mit.edu/mini-courses/python/data-processing-with-python/matplotlib.md)
- [About Matplotlib](https://igb.mit.edu/mini-courses/python/data-processing-with-python/matplotlib/about-matplotlib.md)
- [Basic Plotting](https://igb.mit.edu/mini-courses/python/data-processing-with-python/matplotlib/basic-plotting.md)
- [Advanced Plotting](https://igb.mit.edu/mini-courses/python/data-processing-with-python/matplotlib/advanced-plotting.md)
- [Seaborn](https://igb.mit.edu/mini-courses/python/data-processing-with-python/seaborn.md)
- [About Seaborn](https://igb.mit.edu/mini-courses/python/data-processing-with-python/seaborn/about-seaborn.md)
- [Basic Plotting](https://igb.mit.edu/mini-courses/python/data-processing-with-python/seaborn/basic-plotting.md)
- [Visualizing Statistics](https://igb.mit.edu/mini-courses/python/data-processing-with-python/seaborn/visualizing-statistics.md)
- [Visualizing Proteomics Data](https://igb.mit.edu/mini-courses/python/data-processing-with-python/seaborn/visualizing-proteomics-data.md)
- [Visualizing RNAseq Data](https://igb.mit.edu/mini-courses/python/data-processing-with-python/seaborn/visualizing-rnaseq-data.md)
- [R](https://igb.mit.edu/mini-courses/r.md)
- [Intro to R](https://igb.mit.edu/mini-courses/r/intro-to-r.md)
- [Before We Start](https://igb.mit.edu/mini-courses/r/intro-to-r/before-we-start.md)
- [Getting to Know R](https://igb.mit.edu/mini-courses/r/intro-to-r/getting-to-know-r.md)
- [Variables in R](https://igb.mit.edu/mini-courses/r/intro-to-r/variables-in-r.md)
- [Functions in R](https://igb.mit.edu/mini-courses/r/intro-to-r/functions-in-r.md)
- [Data Manipulation](https://igb.mit.edu/mini-courses/r/intro-to-r/data-manipulation.md)
- [Simple Statistics in R](https://igb.mit.edu/mini-courses/r/intro-to-r/simple-statistics-in-r.md)
- [Basic Plotting in R](https://igb.mit.edu/mini-courses/r/intro-to-r/basic-plotting-in-r.md)
- [Advanced Plotting in R](https://igb.mit.edu/mini-courses/r/intro-to-r/advanced-plotting-in-r.md)
- [Writing Figures to a File](https://igb.mit.edu/mini-courses/r/intro-to-r/writing-figures-to-a-file.md)
- [Further Resources](https://igb.mit.edu/mini-courses/r/intro-to-r/further-resources.md)
- [Version Control with Git](https://igb.mit.edu/mini-courses/version-control-with-git.md)
- [About Version Control](https://igb.mit.edu/mini-courses/version-control-with-git/about-version-control.md)
- [Setting up Git](https://igb.mit.edu/mini-courses/version-control-with-git/setting-up-git.md)
- [Creating a Repository](https://igb.mit.edu/mini-courses/version-control-with-git/creating-a-repository.md)
- [Tracking Changes](https://igb.mit.edu/mini-courses/version-control-with-git/tracking-changes.md)
- [Exercises](https://igb.mit.edu/mini-courses/version-control-with-git/tracking-changes/exercises.md)
- [Exploring History](https://igb.mit.edu/mini-courses/version-control-with-git/exploring-history.md)
- [Exercises](https://igb.mit.edu/mini-courses/version-control-with-git/exploring-history/exercises.md)
- [Ignoring Things](https://igb.mit.edu/mini-courses/version-control-with-git/ignoring-things.md)
- [Remotes in Github](https://igb.mit.edu/mini-courses/version-control-with-git/remotes-in-github.md)
- [Collaborating](https://igb.mit.edu/mini-courses/version-control-with-git/collaborating.md)
- [Conflicts](https://igb.mit.edu/mini-courses/version-control-with-git/conflicts.md)
- [Open Science](https://igb.mit.edu/mini-courses/version-control-with-git/open-science.md)
- [Licensing](https://igb.mit.edu/mini-courses/version-control-with-git/licensing.md)
- [Citation](https://igb.mit.edu/mini-courses/version-control-with-git/citation.md)
- [Hosting](https://igb.mit.edu/mini-courses/version-control-with-git/hosting.md)
- [Supplemental](https://igb.mit.edu/mini-courses/version-control-with-git/supplemental.md)
- [Research Computing on Engaging with VSCode](https://igb.mit.edu/mini-courses/research-computing-on-engaging-with-vscode.md)
- [Connecting to Engaging via OnDemand](https://igb.mit.edu/mini-courses/research-computing-on-engaging-with-vscode/connecting-to-engaging-via-ondemand.md)
- [Files](https://igb.mit.edu/mini-courses/research-computing-on-engaging-with-vscode/connecting-to-engaging-via-ondemand/files.md)
- [Shell Access](https://igb.mit.edu/mini-courses/research-computing-on-engaging-with-vscode/connecting-to-engaging-via-ondemand/shell-access.md)
- [Interactive Apps](https://igb.mit.edu/mini-courses/research-computing-on-engaging-with-vscode/connecting-to-engaging-via-ondemand/interactive-apps.md)
- [Engaging Desktop](https://igb.mit.edu/mini-courses/research-computing-on-engaging-with-vscode/connecting-to-engaging-via-ondemand/interactive-apps/engaging-desktop.md)
- [Jupyter Notebook](https://igb.mit.edu/mini-courses/research-computing-on-engaging-with-vscode/connecting-to-engaging-via-ondemand/interactive-apps/jupyter-notebook.md)
- [RStudio Server](https://igb.mit.edu/mini-courses/research-computing-on-engaging-with-vscode/connecting-to-engaging-via-ondemand/interactive-apps/rstudio-server.md)
- [VSCode](https://igb.mit.edu/mini-courses/research-computing-on-engaging-with-vscode/vscode.md)
- [Basic Guide](https://igb.mit.edu/mini-courses/research-computing-on-engaging-with-vscode/vscode/basic-guide.md)
- [SSH Configuration](https://igb.mit.edu/mini-courses/research-computing-on-engaging-with-vscode/vscode/ssh-configuration.md)
- [Connecting to Engaging](https://igb.mit.edu/mini-courses/research-computing-on-engaging-with-vscode/vscode/connecting-to-engaging.md)
- [LLM Support](https://igb.mit.edu/mini-courses/research-computing-on-engaging-with-vscode/vscode/llm-support.md)
- [Running Containerized RStudio](https://igb.mit.edu/mini-courses/research-computing-on-engaging-with-vscode/running-containerized-rstudio.md)